Here is the list of the programs that I use
Activator – shortcuts
iCleaner Pro 7.3.0 beta from repository http://exile90software.com/cydia/beta
FlipControlCenter – replace the original shortcut icons
IPPeek – via activator
AppSync Unified – you need this to install unsinged ipa files.
it has nice list of shortcuts, works bad on ios 9.3.3
MobileTerminal (mine bad choice) from Karens repo https://cydia.angelxwind.net/ which is on the same code base iOS Terminal form BigBoss
MTerminal works good – from the BigBoss repo.
http://repo.thireus.com – install recommended ios9/ios8/ios7 hacker tools, this includes “newterm” which is updated through ios9. The hacker package installs a bunch of command line utilities like ping, nmap, get, top wget, etc as well. otherwise if you just want terminal just install newterm.
AudioRecored2 from http://limneos.net/repo or
AppCake – from http://cydia.iphonecake.com/
Bridge – import music to Music from http://canolli.yourepo.com/
Tried but not using
https://appaddict.org/ios-app/ – trying now
https://www.yourepo.com/repo/canolli/pack/bridge – tring now and want to try those also
iFile – from here http://www.sinfuliphonerepo.com/
PasswordPilot – inserts your apple password automatically
LocallApStore from http://system.in-appstore.com/repo
Want to try
Nice liste of more apps http://www.islamadel.com/en/notes/8-iphone/14-iphone-apps-and-settings
Under linux I use this command to install ipa files.
ideviceinstaller -i /home/guda/Documents/iphone/ipa/openmaps.ipa
This comes from http://www.libimobiledevice.org/